# HG changeset patch
# User mingchen0919
# Date 1514441576 18000
# Node ID b7aa1bb07ff33cd3212aa14f6ffee6c68acb7b2f
# Parent  2f72cbded1d1a25f09c3509cc36e1bbfb1086842
create tool

diff -r 2f72cbded1d1 -r b7aa1bb07ff3 rmarkdown_merge_rmarkdown.xml
--- a/rmarkdown_merge_rmarkdown.xml	Thu Dec 28 01:08:56 2017 -0500
+++ b/rmarkdown_merge_rmarkdown.xml	Thu Dec 28 01:12:56 2017 -0500
@@ -10,15 +10,15 @@
   <stdio>
     <regex source="stderr" match="XXX" level="warning" description="Check the warnings_and_errors.txt file for more details."/>
   </stdio>
-  <command><![CDATA[                    Rscript '${__tool_directory__}/rmarkdown_merge_rmarkdown_render.R'
-                        -e $echo
-                        -r $report
-                        -d $report.files_path
-                        -s $sink_message
-                        -t '${__tool_directory__}/rmarkdown_merge_rmarkdown.Rmd'
+  <command><![CDATA[                    Rscript '${__tool_directory__}/rmarkdown_merge_rmarkdown_render.R'
+                        -e $echo
+                        -r $report
+                        -d $report.files_path
+                        -s $sink_message
+                        -t '${__tool_directory__}/rmarkdown_merge_rmarkdown.Rmd'
                     ]]></command>
   <inputs>
-    <param type="integer" name="echo" label="Display analysis code in report?" optional="False" checked="False" truevalue="TRUE" falsevalue="FALSE"/>
+    <param type="boolean" name="echo" label="Display analysis code in report?" optional="False" checked="False" truevalue="TRUE" falsevalue="FALSE"/>
     <param type="data" name="rmarkdown_files" label="R Markdown files" optional="False" format="Rmd" multiple="True"/>
   </inputs>
   <outputs>