Mercurial > repos > mingchen0919 > rmarkdown_feature_counts

changeset 12:7a2369ab4f84 draft

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update
author mingchen0919
date Fri, 29 Dec 2017 14:24:54 -0500
parents 238d57ce7d74
children eb51eca6cdf1
files rmarkdown_feature_counts_render.R
diffstat 1 files changed, 10 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/rmarkdown_feature_counts_render.R	Fri Dec 29 14:07:35 2017 -0500
+++ b/rmarkdown_feature_counts_render.R	Fri Dec 29 14:24:54 2017 -0500
@@ -1,16 +1,19 @@
-library(getopt)
-library(rmarkdown)
-library(htmltools)
-library(dplyr)
-library(Rsubread)
-library(DT)
-
 ##============ Sink warnings and errors to a file ==============
 ## use the sink() function to wrap all code within it.
 ##==============================================================
 zz = file('warnings_and_errors.txt')
 sink(zz)
 sink(zz, type = 'message')
+
+  ##============== load packages ===============================
+  library(getopt)
+  library(rmarkdown)
+  library(htmltools)
+  library(dplyr)
+  library(Rsubread)
+  library(DT)
+  ##============================================================
+
   ##---------below is the code for rendering .Rmd templates-----
 
   ##=============STEP 1: handle command line arguments==========