Mercurial > repos > mingchen0919 > rmarkdown_feature_counts

diff rmarkdown_feature_counts.Rmd @ 13:eb51eca6cdf1 draft

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update
author mingchen0919
date Fri, 29 Dec 2017 15:00:59 -0500
parents 238d57ce7d74
children bfa6440d01a3
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line diff
--- a/rmarkdown_feature_counts.Rmd	Fri Dec 29 14:24:54 2017 -0500
+++ b/rmarkdown_feature_counts.Rmd	Fri Dec 29 15:00:59 2017 -0500
@@ -85,8 +85,13 @@
 ```{r}
 colnames(res$counts) = strsplit(opt$input_bam_names, ',')[[1]]
 # write count into csv file
-write.csv(res$counts, file = 'feature_counts.csv', row.names = TRUE)
-datatable(res$counts)
+write.table(res$counts, file = 'feature_counts.txt')
+```
+
+Display the first 100 rows.
+
+```{r}
+datatable(head(res$counts, 100))
 ```
 
 # Save results into RData file