Mercurial > repos > mingchen0919 > rmarkdown_feature_counts

diff rmarkdown_feature_counts.xml @ 15:b4b2b9c4eaee draft

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update
author mingchen0919
date Fri, 29 Dec 2017 22:04:39 -0500
parents eb51eca6cdf1
children 6290d3e9e44a
line wrap: on
line diff
--- a/rmarkdown_feature_counts.xml	Fri Dec 29 20:10:19 2017 -0500
+++ b/rmarkdown_feature_counts.xml	Fri Dec 29 22:04:39 2017 -0500
@@ -77,8 +77,8 @@
                optional="False" value="mm10"/>
         <param type="data" name="annot_ext" label="External annotation (GTF)"
                help="A character string giving name of a user-provided annotation file or a data frame including user-provided annotation data"
-               optional="False" format="gtf,saf" multiple="False"/>
-        <param type="boolean" name="isGTFAnnotationFile" optional="False" checked="False" truevalue="TRUE"
+               optional="False" format="gtf,gff,saf" multiple="False"/>
+        <param type="boolean" name="isGTFAnnotationFile" optional="False" checked="True" truevalue="TRUE"
                falsevalue="FALSE"/>
         <param type="text" name="gtf_feature_type" label="GTF.featureType"
                help="a character string giving the feature type used to select rows in the GTF annotation which will be used for read summarization. exon by default. This argument is only applicable when isGTFAnnotationFile is TRUE"