diff rmarkdown_feature_counts_render.R @ 11:238d57ce7d74 draft

update

--- a/rmarkdown_feature_counts_render.R	Fri Dec 29 00:17:31 2017 -0500
+++ b/rmarkdown_feature_counts_render.R	Fri Dec 29 14:07:35 2017 -0500
@@ -3,6 +3,7 @@
 library(htmltools)
 library(dplyr)
 library(Rsubread)
+library(DT)
 
 ##============ Sink warnings and errors to a file ==============
 ## use the sink() function to wrap all code within it.
@@ -33,7 +34,8 @@
   args_list=list()
   ##------- 1. input data ---------------------
   args_list$e = c('echo', 'e', '1', 'logical')
-  args_list$a = c('input_bam', 'a', '1', 'character')
+  args_list$a = c('input_bam_paths', 'a', '1', 'character')
+  args_list$N = c('input_bam_names', 'N', '1', 'character')
   args_list$b = c('annot_inbuilt', 'b', '1', 'character')
   args_list$c = c('annot_ext', 'c', '1', 'character')
   args_list$f = c('isGTFAnnotationFile', 'f', '1', 'logical')