Mercurial > repos > mingchen0919 > rmarkdown_fastq_dump

changeset 8:86a31717730e draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastq_dump commit c9517f0b061cdca3b79678d9a2620e1e43115d42-dirty
author mingchen0919
date Wed, 27 Sep 2017 14:05:42 -0400
parents 2d1c5d1633bf
children 233210d44681
files fastq_dump_se.xml
diffstat 1 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_dump_se.xml	Wed Sep 27 13:41:45 2017 -0400
+++ b/fastq_dump_se.xml	Wed Sep 27 14:05:42 2017 -0400
@@ -34,6 +34,7 @@
 
                 -r $report
                 -d $report.files_path
+                -s $sink_output
 
                 -t '${__tool_directory__}/fastq_dump_se.Rmd'
         ]]>
@@ -49,5 +50,6 @@
         <collection type="list" name="list_collection">
             <discover_datasets pattern="__name_and_ext__" directory="read_files_directory" />
         </collection>
+        <data format="txt" name="sink_output" label="sink output" from_work_dir="sink_output.txt" />
     </outputs>
 </tool>
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