Mercurial > repos > mingchen0919 > rmarkdown_fastq_dump
diff fastq_dump_pe.xml @ 21:3c859d094074 draft default tip
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/aurora-tools/rmarkdown_fastq_dump commit ffa886b188215708786e3c49877fc08fea60659e
author | mingchen0919 |
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date | Wed, 04 Apr 2018 10:10:26 -0400 |
parents | 42e154ba2d35 |
children |
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--- a/fastq_dump_pe.xml Wed Sep 27 21:38:54 2017 -0400 +++ b/fastq_dump_pe.xml Wed Apr 04 10:10:26 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="rmarkdown_fastqc_dump_pe" name="fastqc-dump-pe" version="1.0.0"> +<tool id="rmarkdown_fastq_dump_pe" name="fastq-dump-pe" version="1.0.2"> <requirements> <requirement type="package" version="1.15.0.6-0">pandoc</requirement> <requirement type="package" version="1.20.0">r-getopt</requirement> @@ -22,7 +22,6 @@ <![CDATA[ Rscript '${__tool_directory__}/fastq_dump_pe_render.R' -i '$sra_accession' - -e $echo -f $format -r $report @@ -35,10 +34,10 @@ <inputs> <param type="text" name="sra_accession" label="SRR/DRR/ERR accessions" optional="false" help="A list of SRR/DRR/ERR accessions separated by comma or space. e.g. SRR6077558,ERR343809"/> - <param type="boolean" name="format" truevalue="fastq" falsevalue="fasta" checked="true" - label="output files in fastq (Yes) or fasta (No)?"/> - <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" - label="Display analysis code in report?"/> + <param type="select" name="format" label="Output format"> + <option value="fastq" selected="true">fastq</option> + <option value="fasta">fasta</option> + </param> </inputs> <outputs> <data format="html" name="report" label="Fastq-dump report" />