Mercurial > repos > mingchen0919 > rmarkdown_fastq_dump

diff fastq_dump_pe_render.R @ 15:627c487d22e3 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastq_dump commit affb362adeb095389646b0c51738d24c2de3838d-dirty
author mingchen0919
date Wed, 27 Sep 2017 17:05:22 -0400
parents 66bc1016ec2a
children 883f102eb227
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--- a/fastq_dump_pe_render.R	Wed Sep 27 17:00:42 2017 -0400
+++ b/fastq_dump_pe_render.R	Wed Sep 27 17:05:22 2017 -0400
@@ -43,7 +43,7 @@
 spec_list$OUTPUT_DIR = c('output_dir', 'd', '1', 'character')
 spec_list$SINK_OUTPUT = c('sink_message', 's', '1', 'character')
 ##--------3. Rmd templates in the tool directory ----------
-spec_list$FASTQ_DUMP_SE_RMD = c('fastq_dump_pe_rmd', 't', '1', 'character')
+spec_list$FASTQ_DUMP_PE_RMD = c('fastq_dump_pe_rmd', 't', '1', 'character')
 
 spec = t(as.data.frame(spec_list))
 opt = getopt(spec)