Mercurial > repos > mingchen0919 > rmarkdown_fastq_dump

diff fastq_dump_se_render.R @ 9:233210d44681 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastq_dump commit 5d2a63708a8abf73432c1d6863d970146c6a38b2-dirty
author mingchen0919
date Wed, 27 Sep 2017 16:16:12 -0400
parents 2d1c5d1633bf
children 66bc1016ec2a
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--- a/fastq_dump_se_render.R	Wed Sep 27 14:05:42 2017 -0400
+++ b/fastq_dump_se_render.R	Wed Sep 27 16:16:12 2017 -0400
@@ -20,8 +20,10 @@
   library(tools)
 })
 
-#/////////////////////// SINK OUTPUTS TO A FILE FOR DEBUGGING ///////////
-sink('sink_output.txt')
+#/////////////////////// SINK WARNINGS AND ERRORS TO A FILE FOR DEBUGGING ///////////
+zz = file('warnings_and_errors.txt')
+sink(zz)
+sink(zz, type = 'message')
 
 # column 1: the long flag name
 # column 2: the short flag alias. A SINGLE character string