Mercurial > repos > mingchen0919 > rmarkdown_collection_builder

changeset 40:d3675bae374e draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 8399aeb3d68e39b9d6b331fe8fcbcc9d920c55ae-dirty
author mingchen0919
date Tue, 26 Sep 2017 01:32:02 -0400
parents b1fd5c521def
children a660c2aa20d6
files collection_list.xml collection_list_paired.xml collection_paired.xml
diffstat 3 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/collection_list.xml	Tue Sep 26 01:27:13 2017 -0400
+++ b/collection_list.xml	Tue Sep 26 01:32:02 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="rmarkdown_collection_list" name="Collection type: list" version="1.0.0">
+<tool id="rmarkdown_collection_list" name="Collection type (list)" version="1.0.0">
     <requirements>
         <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
         <requirement type="package" version="1.20.0">r-getopt</requirement>
--- a/collection_list_paired.xml	Tue Sep 26 01:27:13 2017 -0400
+++ b/collection_list_paired.xml	Tue Sep 26 01:32:02 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="rmarkdown_collection_list_paired" name="Collection type: list:paired" version="1.0.0">
+<tool id="rmarkdown_collection_list_paired" name="Collection type (list:paired)" version="1.0.0">
     <requirements>
         <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
         <requirement type="package" version="1.20.0">r-getopt</requirement>
@@ -47,7 +47,7 @@
     <outputs>
         <data format="html" name="report" label="Collection builder (list:paired collection)" />
         <collection type="list:paired" name="list_collection">
-            <discover_datasets pattern="(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fq" directory="files_directory"/>
+            <discover_datasets pattern="(?P&lt;identifier_0&gt;)_(?P&lt;identifier_1&gt;)\.fq" directory="files_directory"/>
         </collection>
     </outputs>
 </tool>
\ No newline at end of file
--- a/collection_paired.xml	Tue Sep 26 01:27:13 2017 -0400
+++ b/collection_paired.xml	Tue Sep 26 01:32:02 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="rmarkdown_collection_paired" name="Collection type: list:paired" version="1.0.0">
+<tool id="rmarkdown_collection_paired" name="Collection type (paired)" version="1.0.0">
     <requirements>
         <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
         <requirement type="package" version="1.20.0">r-getopt</requirement>