Mercurial > repos > mingchen0919 > rmarkdown_collection_builder
changeset 27:5982d63cdeda draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 436d91722b309f61890d13d7ed28cd43c79a5c74-dirty
| author | mingchen0919 |
|---|---|
| date | Mon, 25 Sep 2017 23:42:32 -0400 |
| parents | 5391cd0565c9 |
| children | cde8aa76d84c |
| files | collection_list_paired.Rmd collection_list_paired.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/collection_list_paired.Rmd Mon Sep 25 23:38:47 2017 -0400 +++ b/collection_list_paired.Rmd Mon Sep 25 23:42:32 2017 -0400 @@ -43,7 +43,7 @@ new_files = gsub('\\.dat', '_1\\.FORMAT', original_files) # rename files file.copy(paste0('./forward_files_directory/', original_files), - paste0('OUTPUT_DIR', new_files)) + paste0('./files_directory', new_files)) ``` ## Reverse inputs @@ -61,6 +61,6 @@ new_files = gsub('\\.dat', '_2\\.FORMAT', original_files) # rename files file.copy(paste0('./reverse_files_directory/', original_files), - paste0('OUTPUT_DIR', new_files)) + paste0('./files_directory', new_files)) ```
--- a/collection_list_paired.xml Mon Sep 25 23:38:47 2017 -0400 +++ b/collection_list_paired.xml Mon Sep 25 23:42:32 2017 -0400 @@ -47,7 +47,7 @@ <outputs> <data format="html" name="report" label="Collection builder (list:paired collection)" /> <collection type="list:paired" name="list_collection"> - <discover_datasets pattern="__name_and_ext__" visible="true" /> + <discover_datasets pattern="__name_and_ext__" directory="files_directory" /> </collection> </outputs> </tool> \ No newline at end of file