# HG changeset patch
# User mingchen0919
# Date 1506457427 14400
# Node ID 618de85db3319a2b24246f2500b20dd3d6ea4e19
# Parent  79b375ee134cafd611addf5161292eed0b6dabef
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 88ca36a41aa577ba888cee39cf81b176bf7e68db-dirty

diff -r 79b375ee134c -r 618de85db331 collection_list_paired.Rmd
--- a/collection_list_paired.Rmd	Tue Sep 26 16:13:18 2017 -0400
+++ b/collection_list_paired.Rmd	Tue Sep 26 16:23:47 2017 -0400
@@ -40,9 +40,7 @@
 # get original file names
 original_files = list.files('./forward_files_directory')
 # create new files names from original file names
-new_files = gsub('\\.dat', '_forward\\.FORMAT', original_files)
 new_files = paste0('input', 1:length(original_files), '_forward.FORMAT')
-new_files
 # rename files
 file.copy(paste0('./forward_files_directory/', original_files),
           paste0('./files_directory/', new_files))
@@ -60,9 +58,7 @@
 # get original file names
 original_files = list.files('./reverse_files_directory')
 # create new files names from original file names
-new_files = gsub('\\.dat', '_reverse\\.FORMAT', original_files)
 new_files = paste0('input', 1:length(original_files), '_reverse.FORMAT')
-new_files
 # rename files
 file.copy(paste0('./reverse_files_directory/', original_files),
           paste0('./files_directory/', new_files))