# HG changeset patch
# User mingchen0919
# Date 1506398329 14400
# Node ID 9e9396939e77e529303ef7c775cb020a406244a2
# Parent  bf6e2d98e280b0840066f87a827dd34d27f1fc4d
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 436d91722b309f61890d13d7ed28cd43c79a5c74-dirty

diff -r bf6e2d98e280 -r 9e9396939e77 collection_list_paired.Rmd
--- a/collection_list_paired.Rmd	Mon Sep 25 23:46:24 2017 -0400
+++ b/collection_list_paired.Rmd	Mon Sep 25 23:58:49 2017 -0400
@@ -40,7 +40,8 @@
 # get original file names
 original_files = list.files('./forward_files_directory')
 # create new files names from original file names
-new_files = gsub('\\.dat', '_1\\.FORMAT', original_files)
+new_files = gsub('\\.dat', '_forward\\.FORMAT', original_files)
+new_files
 # rename files
 file.copy(paste0('./forward_files_directory/', original_files),
           paste0('./files_directory/', new_files))
@@ -58,7 +59,8 @@
 # get original file names
 original_files = list.files('./reverse_files_directory')
 # create new files names from original file names
-new_files = gsub('\\.dat', '_2\\.FORMAT', original_files)
+new_files = gsub('\\.dat', '_reverse\\.FORMAT', original_files)
+new_files
 # rename files
 file.copy(paste0('./reverse_files_directory/', original_files),
           paste0('./files_directory/', new_files))