# HG changeset patch
# User mingchen0919
# Date 1506398687 14400
# Node ID 306192dd0377bb44d02419eb0a33abc0dbef3196
# Parent  9e9396939e77e529303ef7c775cb020a406244a2
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 436d91722b309f61890d13d7ed28cd43c79a5c74-dirty

diff -r 9e9396939e77 -r 306192dd0377 collection_list_paired.Rmd
--- a/collection_list_paired.Rmd	Mon Sep 25 23:58:49 2017 -0400
+++ b/collection_list_paired.Rmd	Tue Sep 26 00:04:47 2017 -0400
@@ -41,6 +41,7 @@
 original_files = list.files('./forward_files_directory')
 # create new files names from original file names
 new_files = gsub('\\.dat', '_forward\\.FORMAT', original_files)
+new_files = paste0('input_', 1:length(original_files), '_forward.FORMAT')
 new_files
 # rename files
 file.copy(paste0('./forward_files_directory/', original_files),
@@ -60,6 +61,7 @@
 original_files = list.files('./reverse_files_directory')
 # create new files names from original file names
 new_files = gsub('\\.dat', '_reverse\\.FORMAT', original_files)
+new_files = paste0('input_', 1:length(original_files), '_reverse.FORMAT')
 new_files
 # rename files
 file.copy(paste0('./reverse_files_directory/', original_files),