Mercurial > repos > mingchen0919 > rmarkdown_collection_builder

diff collection_list.xml @ 13:ff1cb127967e draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 6df7b8ef3a603f7792ed5815ff324ede8a7b2b0b-dirty
author mingchen0919
date Mon, 25 Sep 2017 16:19:14 -0400
parents 6afe8433106c
children b4adc08beae7
line wrap: on
line diff
--- a/collection_list.xml	Mon Sep 25 16:10:27 2017 -0400
+++ b/collection_list.xml	Mon Sep 25 16:19:14 2017 -0400
@@ -14,6 +14,7 @@
             Rscript '${__tool_directory__}/collection_list_render.R'
                 -l $file_list
                 -e $echo
+                -f $format
 
                 -r $report
                 -d $report.files_path
@@ -24,6 +25,7 @@
     <inputs>
         <param type="data" name="file_list" multiple="true" />
         <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Display analysis code in report?" />
+        <param type="text" name="format" label="the format of input files (e.g., fastq, fastqsanger, fasta)"/>
     </inputs>
     <outputs>
         <data format="html" name="report" label="fastqc report" />