Mercurial > repos > mingchen0919 > rmarkdown_collection_builder

diff collection_list.xml @ 1:f85a6bcf940e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit fecb83fd1c7b99c3672a61222f3822637eff2571-dirty
author mingchen0919
date Mon, 25 Sep 2017 14:03:44 -0400
parents 87c21e14f221
children f8d0ad99fe9b
line wrap: on
line diff
--- a/collection_list.xml	Mon Sep 25 12:15:23 2017 -0400
+++ b/collection_list.xml	Mon Sep 25 14:03:44 2017 -0400
@@ -16,6 +16,7 @@
 
                 -r $report
                 -o $list_collection
+                -d $list_collection.files_path
 
                 -t '${__tool_directory__}/collection_list.Rmd'
         ]]>
@@ -26,6 +27,8 @@
     </inputs>
     <outputs>
         <data format="html" name="report" label="fastqc report" />
-        <collection type="list" name="list_collection" />
+        <collection type="list" name="list_collection">
+            <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="files_directory" />
+        </collection>
     </outputs>
 </tool>
\ No newline at end of file