Mercurial > repos > mingchen0919 > rmarkdown_collection_builder
diff collection_list.Rmd @ 1:f85a6bcf940e draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit fecb83fd1c7b99c3672a61222f3822637eff2571-dirty
author | mingchen0919 |
---|---|
date | Mon, 25 Sep 2017 14:03:44 -0400 |
parents | 87c21e14f221 |
children | 9c2059916485 |
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--- a/collection_list.Rmd Mon Sep 25 12:15:23 2017 -0400 +++ b/collection_list.Rmd Mon Sep 25 14:03:44 2017 -0400 @@ -17,3 +17,13 @@ ```{r} str(opt) ``` + + +```{bash 'copy data to working directory', echo=FALSE} +mkdir files_directory +# Copy uploaded data to the working directory +for f in $(echo FILE_LIST | sed "s/,/ /g") +do + cp $f ./files_directory +done +``` \ No newline at end of file