diff collection_list.Rmd @ 1:f85a6bcf940e draft

planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit fecb83fd1c7b99c3672a61222f3822637eff2571-dirty
author mingchen0919
date Mon, 25 Sep 2017 14:03:44 -0400
parents 87c21e14f221
children 9c2059916485
line wrap: on
line diff
--- a/collection_list.Rmd	Mon Sep 25 12:15:23 2017 -0400
+++ b/collection_list.Rmd	Mon Sep 25 14:03:44 2017 -0400
@@ -17,3 +17,13 @@
 ```{r}
 str(opt)
 ```
+
+
+```{bash 'copy data to working directory', echo=FALSE}
+mkdir files_directory
+# Copy uploaded data to the working directory
+for f in $(echo FILE_LIST | sed "s/,/ /g")
+do
+    cp $f ./files_directory
+done
+```
\ No newline at end of file