diff collection_list.xml @ 15:b4adc08beae7 draft

planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 93b036c66fd754a7af459fa80d3f7f143a68477b-dirty

--- a/collection_list.xml	Mon Sep 25 16:24:24 2017 -0400
+++ b/collection_list.xml	Mon Sep 25 16:37:57 2017 -0400
@@ -1,7 +1,4 @@
 <tool id="rmarkdown_collection_list" name="Collection type: list" version="1.0.0">
-    <description>
-        Create a 'list' dataset collection from a set of files in Galaxy history.
-    </description>
     <requirements>
         <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
         <requirement type="package" version="1.20.0">r-getopt</requirement>
@@ -9,6 +6,23 @@
         <requirement type="package" version="0.3.5">r-htmltools</requirement>
         <requirement type="package" version="0.5.0">r-dplyr</requirement>
     </requirements>
+    <description>
+        Create a 'list' dataset collection from a set of files in Galaxy history.
+    </description>
+    <stdio>
+        <regex match="Execution halted"
+               source="both"
+               level="fatal"
+               description="Execution halted." />
+        <regex match="Error in"
+               source="both"
+               level="fatal"
+               description="An undefined error occured, please check your intput carefully and contact your administrator." />
+        <regex match="Fatal error"
+               source="both"
+               level="fatal"
+               description="An undefined error occured, please check your intput carefully and contact your administrator." />
+    </stdio>
     <command>
         <![CDATA[
             Rscript '${__tool_directory__}/collection_list_render.R'