Mercurial > repos > mingchen0919 > rmarkdown_collection_builder

diff collection_list.Rmd @ 8:9c2059916485 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 6df7b8ef3a603f7792ed5815ff324ede8a7b2b0b-dirty
author mingchen0919
date Mon, 25 Sep 2017 15:30:55 -0400
parents f85a6bcf940e
children 6afe8433106c
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--- a/collection_list.Rmd	Mon Sep 25 15:19:06 2017 -0400
+++ b/collection_list.Rmd	Mon Sep 25 15:30:55 2017 -0400
@@ -14,12 +14,14 @@
 )
 ```
 
+# Command line arguments
+
 ```{r}
 str(opt)
 ```
 
 
-```{bash 'copy data to working directory', echo=FALSE}
+```{bash 'copy data to working directory'}
 mkdir files_directory
 # Copy uploaded data to the working directory
 for f in $(echo FILE_LIST | sed "s/,/ /g")