diff collection_paired.Rmd @ 45:335e9eb25532 draft

planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit b15eec6b208c8a41b8ad8969ab9c6046d7f0b73c-dirty

--- a/collection_paired.Rmd	Tue Sep 26 09:29:07 2017 -0400
+++ b/collection_paired.Rmd	Tue Sep 26 12:04:54 2017 -0400
@@ -0,0 +1,29 @@
+---
+title: 'Build collection: a paired datasets'
+output:
+    html_document:
+      number_sections: true
+      toc: true
+      theme: cosmo
+      highlight: tango
+---
+
+```{r setup, include=FALSE, warning=FALSE, message=FALSE}
+knitr::opts_chunk$set(
+  echo = ECHO
+)
+```
+
+# Command line arguments
+
+```{r 'command line arguments'}
+str(opt)
+```
+
+# Rename files
+
+```{r}
+file.copy("FORWARD_INPUT", './files_directory/forward.FORMAT')
+file.copy("REVERSE_INPUT", './files_directory/reverse.FORMAT')
+```
+