diff collection_list_paired.Rmd @ 45:335e9eb25532 draft

planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit b15eec6b208c8a41b8ad8969ab9c6046d7f0b73c-dirty

--- a/collection_list_paired.Rmd	Tue Sep 26 09:29:07 2017 -0400
+++ b/collection_list_paired.Rmd	Tue Sep 26 12:04:54 2017 -0400
@@ -1,5 +1,5 @@
 ---
-title: 'Collection builder (collection type: list:paired)'
+title: 'Build collection: a list of paired datasets'
 output:
     html_document:
       number_sections: true
@@ -41,7 +41,7 @@
 original_files = list.files('./forward_files_directory')
 # create new files names from original file names
 new_files = gsub('\\.dat', '_forward\\.FORMAT', original_files)
-new_files = paste0('input', 1:length(original_files), '_forward.FORMAT')
+new_files = paste0('input_', 1:length(original_files), '_forward.FORMAT')
 new_files
 # rename files
 file.copy(paste0('./forward_files_directory/', original_files),
@@ -61,7 +61,7 @@
 original_files = list.files('./reverse_files_directory')
 # create new files names from original file names
 new_files = gsub('\\.dat', '_reverse\\.FORMAT', original_files)
-new_files = paste0('input', 1:length(original_files), '_reverse.FORMAT')
+new_files = paste0('input_', 1:length(original_files), '_reverse.FORMAT')
 new_files
 # rename files
 file.copy(paste0('./reverse_files_directory/', original_files),