Mercurial > repos > mingchen0919 > rmarkdown_collection_builder
comparison collection_list_paired.Rmd @ 30:9e9396939e77 draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 436d91722b309f61890d13d7ed28cd43c79a5c74-dirty
| author | mingchen0919 |
|---|---|
| date | Mon, 25 Sep 2017 23:58:49 -0400 |
| parents | bf6e2d98e280 |
| children | 306192dd0377 |
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| 29:bf6e2d98e280 | 30:9e9396939e77 |
|---|---|
| 38 # copy files to forward_files_directory. | 38 # copy files to forward_files_directory. |
| 39 file.copy(from_files, './forward_files_directory') | 39 file.copy(from_files, './forward_files_directory') |
| 40 # get original file names | 40 # get original file names |
| 41 original_files = list.files('./forward_files_directory') | 41 original_files = list.files('./forward_files_directory') |
| 42 # create new files names from original file names | 42 # create new files names from original file names |
| 43 new_files = gsub('\\.dat', '_1\\.FORMAT', original_files) | 43 new_files = gsub('\\.dat', '_forward\\.FORMAT', original_files) |
| 44 new_files | |
| 44 # rename files | 45 # rename files |
| 45 file.copy(paste0('./forward_files_directory/', original_files), | 46 file.copy(paste0('./forward_files_directory/', original_files), |
| 46 paste0('./files_directory/', new_files)) | 47 paste0('./files_directory/', new_files)) |
| 47 ``` | 48 ``` |
| 48 | 49 |
| 56 # copy files to reverse_files_directory. | 57 # copy files to reverse_files_directory. |
| 57 file.copy(from_files, './reverse_files_directory') | 58 file.copy(from_files, './reverse_files_directory') |
| 58 # get original file names | 59 # get original file names |
| 59 original_files = list.files('./reverse_files_directory') | 60 original_files = list.files('./reverse_files_directory') |
| 60 # create new files names from original file names | 61 # create new files names from original file names |
| 61 new_files = gsub('\\.dat', '_2\\.FORMAT', original_files) | 62 new_files = gsub('\\.dat', '_reverse\\.FORMAT', original_files) |
| 63 new_files | |
| 62 # rename files | 64 # rename files |
| 63 file.copy(paste0('./reverse_files_directory/', original_files), | 65 file.copy(paste0('./reverse_files_directory/', original_files), |
| 64 paste0('./files_directory/', new_files)) | 66 paste0('./files_directory/', new_files)) |
| 65 ``` | 67 ``` |
| 66 | 68 |