comparison collection_list_render.R @ 6:2730c4979dcb draft

planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 6df7b8ef3a603f7792ed5815ff324ede8a7b2b0b-dirty

5:e43cbef7ba64

##====== End of arguments handling ==========

#------ Load libraries ---------
library(rmarkdown)
library(htmltools)

#----- 1. create the report directory ------------------------
system(paste0('mkdir -p ', opt$list_collection_dir))

#----- 2. generate Rmd files with Rmd templates --------------

6:2730c4979dcb

##====== End of arguments handling ==========

#------ Load libraries ---------
library(rmarkdown)
library(htmltools)
library(dplyr)

#----- 1. create the report directory ------------------------
system(paste0('mkdir -p ', opt$list_collection_dir))

#----- 2. generate Rmd files with Rmd templates --------------