# HG changeset patch
# User mingchen0919
# Date 1507744083 14400
# Node ID bfc6133f3a2b21ae9d0ebfe16088d1a0b7bac1cf
# Parent  e901094f7e881b9b7020413dd75cf67d8b274716
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_bdss_client commit ea6df97960569d247d64be1549aa90768c9786f4-dirty

diff -r e901094f7e88 -r bfc6133f3a2b bdss_client.Rmd
--- a/bdss_client.Rmd	Wed Oct 11 13:36:23 2017 -0400
+++ b/bdss_client.Rmd	Wed Oct 11 13:48:03 2017 -0400
@@ -40,10 +40,10 @@
 # loop through SRA accessions to download and extract reads.
 for(url in urls) {
     bdss_command = paste0('/tool_deps/_conda/bin/bdss transfer -u ', url)
-    system(bdss_command, intern = TRUE)
+    system(bdss_command)
 }
 move_files_command = 'find . -type f -print0 | xargs -0 mv -t ./read_files_directory'
-system(move_files_command, intern = TRUE)
+system(move_files_command)
 ```
 
 * `fastq-dump` command