# HG changeset patch
# User mingchen0919
# Date 1507745097 14400
# Node ID 03893b1ee3ef032589f38c48bbfef8e0bb447e28
# Parent  bfc6133f3a2b21ae9d0ebfe16088d1a0b7bac1cf
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_bdss_client commit ea6df97960569d247d64be1549aa90768c9786f4-dirty

diff -r bfc6133f3a2b -r 03893b1ee3ef bdss_client.Rmd
--- a/bdss_client.Rmd	Wed Oct 11 13:48:03 2017 -0400
+++ b/bdss_client.Rmd	Wed Oct 11 14:04:57 2017 -0400
@@ -39,11 +39,9 @@
 urls = urls[urls != '']
 # loop through SRA accessions to download and extract reads.
 for(url in urls) {
-    bdss_command = paste0('/tool_deps/_conda/bin/bdss transfer -u ', url)
+    bdss_command = paste0('cd ./read_files_directory && /tool_deps/_conda/bin/bdss transfer -u ', url)
     system(bdss_command)
 }
-move_files_command = 'find . -type f -print0 | xargs -0 mv -t ./read_files_directory'
-system(move_files_command)
 ```
 
 * `fastq-dump` command