Mercurial > repos > mingchen0919 > rmarkdown_bdss_client

diff bdss_client_render.R @ 8:32e9649f6939 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_bdss_client commit ea6df97960569d247d64be1549aa90768c9786f4-dirty
author mingchen0919
date Wed, 11 Oct 2017 13:25:50 -0400
parents efb1938c3020
children 072568c2c96a
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line diff
--- a/bdss_client_render.R	Wed Oct 11 13:21:54 2017 -0400
+++ b/bdss_client_render.R	Wed Oct 11 13:25:50 2017 -0400
@@ -65,7 +65,7 @@
 #----- 01 bdss_client_sra_se.Rmd -----------------------
 readLines(opt$bdss_client_sra_se_rmd) %>%
   (function(x) {
-    gsub('URLS', opt$sra_accession, x)
+    gsub('URLS', opt$urls, x)
   }) %>%
   (function(x) {
     gsub('ECHO', opt$echo, x)