Mercurial > repos > mingchen0919 > rmarkdown_bdss_client
comparison bdss_client_sra_se_render.R @ 4:206c59e498e7 draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_bdss_client commit ea6df97960569d247d64be1549aa90768c9786f4-dirty
| author | mingchen0919 |
|---|---|
| date | Wed, 11 Oct 2017 11:31:48 -0400 |
| parents | c707a4178832 |
| children | 246cb7315673 |
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| 3:c707a4178832 | 4:206c59e498e7 |
|---|---|
| 51 | 51 |
| 52 #------ Load libraries --------- | 52 #------ Load libraries --------- |
| 53 library(rmarkdown) | 53 library(rmarkdown) |
| 54 library(htmltools) | 54 library(htmltools) |
| 55 library(dplyr) | 55 library(dplyr) |
| 56 library(RCurl) | |
| 56 | 57 |
| 57 #----- 1. create the report directory ------------------------ | 58 #----- 1. create the report directory ------------------------ |
| 58 dir.create(opt$output_dir) | 59 dir.create(opt$output_dir) |
| 59 | 60 |
| 60 #----- 2. generate Rmd files with Rmd templates -------------- | 61 #----- 2. generate Rmd files with Rmd templates -------------- |