Mercurial > repos > mingchen0919 > one_command_liners

changeset 5:fc9043b919b1 draft

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initial tool
author mingchen0919
date Fri, 23 Feb 2018 09:46:08 -0500
parents e1d225154d4a
children 8c3b0ffa0d14
files extract_fields.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/extract_fields.xml	Fri Feb 23 08:39:51 2018 -0500
+++ b/extract_fields.xml	Fri Feb 23 09:46:08 2018 -0500
@@ -12,7 +12,7 @@
   </stdio>
   <command><![CDATA[                    Rscript '${__tool_directory__}/tool_template_render.R'
                         -e $echo
-                        -A $field_numbers
+                        -A $input_field_numbers
                         -B $input_txt
                         -O $output_txt
                         -r $report
@@ -22,13 +22,13 @@
                     ]]></command>
   <inputs>
     <param type="boolean" name="echo" label="Display analysis code in report?" optional="False" checked="False" truevalue="TRUE" falsevalue="FALSE"/>
-    <param type="text" name="field_numbers" label="Field numbers" optional="False"/>
+    <param type="text" name="input_field_numbers" label="input field numbers" optional="False"/>
     <param type="data" name="input_txt" label="Input text file" optional="False" format="txt"/>
   </inputs>
   <outputs>
     <data name="report" format="html" label="tool name report" hidden="false"/>
     <data name="sink_message" format="txt" label="Warnings and Errors" from_work_dir="warnings_and_errors.txt" hidden="false"/>
-    <param type="data" name="output_txt" label="Output text file" optional="False" format="txt"/>
+    <data name="output_txt" format="txt" hidden="false"/>
   </outputs>
   <help><![CDATA[some help text]]></help>
   <citations>