Mercurial > repos > mingchen0919 > one_command_liners
changeset 3:6da0541944de draft
initial tool
| author | mingchen0919 |
|---|---|
| date | Thu, 22 Feb 2018 23:49:26 -0500 |
| parents | f1f549e6d0bc |
| children | e1d225154d4a |
| files | tool_template_render.R |
| diffstat | 1 files changed, 2 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- a/tool_template_render.R Thu Feb 22 23:41:47 2018 -0500 +++ b/tool_template_render.R Thu Feb 22 23:49:26 2018 -0500 @@ -5,5 +5,7 @@ ## get command line inputs into R short_flags = extract_short_flags(xml_file_name = 'extract_fields.xml') opt = getopt_specification_matrix(short_flags) +opt +rmarkdown::render('tool_template.Rmd', output_file = opt$report_html) sink()