diff extract_fields.xml @ 12:9cf29b2374a6 draft

1.1.0

--- a/extract_fields.xml	Sat Feb 24 10:44:30 2018 -0500
+++ b/extract_fields.xml	Sat Feb 24 11:42:37 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="tool_template" name="tool name" version="1.0.0">
+<tool id="tool_template" name="tool name" version="1.1.0">
   <requirements>
     <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
     <requirement type="package" version="1.20.0">r-getopt</requirement>
@@ -10,16 +10,16 @@
   <stdio>
     <regex source="stderr" match="XXX" level="warning" description="Check the warnings_and_errors.txt file for more details."/>
   </stdio>
-  <command><![CDATA[                    Rscript '${__tool_directory__}/tool_template_render.R'
-                        -e $echo
-                        -r $report
-                        -d $report.files_path
-                        -s $sink_message
-                        -t '${__tool_directory__}/tool_template.Rmd'
-
-                        -A $input_field_numbers
-                        -B $input_file
-                        -O $output_txt
+  <command><![CDATA[                    Rscript '${__tool_directory__}/tool_template_render.R'
+                        -e $echo
+                        -r $report
+                        -d $report.files_path
+                        -s $sink_message
+                        -t '${__tool_directory__}/tool_template.Rmd'
+
+                        -A $input_field_numbers
+                        -B $input_file
+                        -O $output_txt
                     ]]></command>
   <inputs>
     <param type="boolean" name="echo" label="Display analysis code in report?" optional="False" checked="False" truevalue="TRUE" falsevalue="FALSE"/>