Mercurial > repos > mingchen0919 > gtg_star_demo
comparison 1-index-genome.sh @ 0:a1448d1f2ee4 draft
planemo upload
| author | mingchen0919 |
|---|---|
| date | Wed, 20 Jun 2018 10:24:45 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:a1448d1f2ee4 |
|---|---|
| 1 # create genome directory for genome indices. | |
| 2 mkdir -p ${X_d}/genomeDir | |
| 3 | |
| 4 STAR \ | |
| 5 --runMode genomeGenerate \ | |
| 6 --genomeDir ${X_d}/genomeDir \ | |
| 7 --genomeFastaFiles $( echo ${X_A} | sed 's/,/ /g' ) \ | |
| 8 --sjdbGTFfile ${X_B} \ | |
| 9 --sjdbOverhang ${X_C} \ | |
| 10 > genome-indexing.log.txt 2>&1 | |
| 11 |