Mercurial > repos > mingchen0919 > elastic_r_tidyverse
diff elastic_r_package_render.R @ 9:06f38d3febdc draft default tip
planemo upload
| author | mingchen0919 |
|---|---|
| date | Wed, 28 Mar 2018 23:34:03 -0400 |
| parents | a936b1aff8d3 |
| children |
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--- a/elastic_r_package_render.R Tue Mar 27 23:42:53 2018 -0400 +++ b/elastic_r_package_render.R Wed Mar 28 23:34:03 2018 -0400 @@ -9,15 +9,16 @@ options(stringsAsFactors = FALSE) library(rmarkdown) +library(tidyverse) #------------------------------------------------ #------------------------------------------------ -options_and_arguments = read.table(paste0(Sys.getenv('REPORT_FILES_PATH'), '/options_and_arguments.txt'), +arguments = read.table(paste0(Sys.getenv('REPORT_FILES_PATH'), '/arguments.txt'), sep = '|', header = TRUE) #-----------------render Rmd-------------- -render(paste0(Sys.getenv('TOOL_INSTALL_DIR'), '/elastic_tool.Rmd'), +render(paste0(Sys.getenv('TOOL_INSTALL_DIR'), '/elastic_r_package.Rmd'), output_file = paste0(Sys.getenv('REPORT_FILES_PATH'), '/report.html')) # for some unknow reason, directly using REPORT as the input value for output_file parameter