Mercurial > repos > mingchen0919 > elastic_expose_data
diff list_render.R @ 7:23cbb0daf18d draft default tip
planemo upload commit d1d9c6fc42729b4194adac13d1b71062bf19ad0b-dirty
| author | mingchen0919 |
|---|---|
| date | Mon, 02 Apr 2018 10:53:05 -0400 |
| parents | 4f9f1e76f7e6 |
| children |
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--- a/list_render.R Mon Apr 02 10:21:30 2018 -0400 +++ b/list_render.R Mon Apr 02 10:53:05 2018 -0400 @@ -19,8 +19,8 @@ # create three folders within working directory dir.create('list') -job_working_dir = getwd() -list_path = paste0(job_working_dir, '/list/') +# job_working_dir = getwd() +# list_path = paste0(job_working_dir, '/list/') #-----------------render Rmd-------------- # copy R markdown file to working directory and render it within the working directory. @@ -32,7 +32,7 @@ # the solution is to render the rmarkdown to a explicitly specified file and then copy the # file to ${REPORT} system(command = 'cp ${REPORT_FILES_PATH}/report.html ${REPORT}') -# system(command = 'sh ${REPORT_FILES_PATH}/script.sh') +system(command = 'sh ${REPORT_FILES_PATH}/script.sh') #------------------------------------------