comparison elastic_expose_individuals.xml @ 4:9ff33a3631fa draft

planemo upload commit 979e0f1c28c74ca7df02ef20c2208e9677bc820a-dirty

3:5838300fc1aa

        export TOOL_LOG='$tool_log' &&
        export REPORT_FILES_PATH='$report.files_path' &&


        ############ run render R script to render R markdowns
        Rscript '${__tool_directory__}/paired_render.R'

        ]]></command>
  <inputs>
    <repeat name="option_argument_path_relative_to_a_tool_repeat" title="INPUT DATA PATH: relative to a tool output directory" min="1" default="1">
      <param name="a_tool_output_dir" type="data" optional="false" multiple="false" label="a tool output directory"/>
      <param type="text" name="value" optional="true" label="relative path"/>
    </repeat>
  </inputs>
  <outputs>
    <data format="html" name="report" label="${tool.name} report"/>
    <data format="txt" name="tool_log" label="${tool.name} log"/>
    <data name="individual_outputs">
      <discover_datasets pattern="__designation_and_ext__" directory="individual_outputs" visible="true"/>
    </data>
  </outputs>
  <citations>
    <expand macro="citations"/>
  </citations>
</tool>

4:9ff33a3631fa

        export TOOL_LOG='$tool_log' &&
        export REPORT_FILES_PATH='$report.files_path' &&


        ############ run render R script to render R markdowns
        Rscript '${__tool_directory__}/individuals_render.R'

        ]]></command>
  <inputs>
    <repeat name="option_argument_path_relative_to_a_tool_repeat" title="INPUT DATA PATH: relative to a tool output directory" min="1" default="1">
      <param name="a_tool_output_dir" type="data" optional="false" multiple="false" label="a tool output directory"/>
      <param type="text" name="value" optional="true" label="relative path"/>
    </repeat>
  </inputs>
  <outputs>
    <data format="html" name="report" label="${tool.name} report ${on_string}">
      <discover_datasets pattern="__designation_and_ext__" directory="individual_outputs" visible="true"/>
    </data>
    <data format="txt" name="tool_log" label="${tool.name} log ${on_string}"/>
  </outputs>
  <citations>
    <expand macro="citations"/>
  </citations>
</tool>