Mercurial > repos > mingchen0919 > elastic_expose_data

annotate elastic_tool_wrappers_macros.xml @ 3:5838300fc1aa draft

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add expose individuals
author mingchen0919
date Mon, 02 Apr 2018 00:32:04 -0400
parents 391394c022b8
children
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1 <?xml version="1.0" encoding="UTF-8"?>
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2 <macros>
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3 <xml name="rmarkdown_requirements">
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4 <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
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5 <requirement type="package" version="1.6">r-rmarkdown</requirement>
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6 </xml>
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7 <xml name="stdio">
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8 <stdio>
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9 <regex match="XXX" source="stderr" level="warning" description="Check the tool log output file for more details."/>
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10 </stdio>
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11 </xml>
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12 <!--OPTION/ARGUMENT PAIRS and INPUT types-->
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14 <!--input path-->
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15 <xml name="option_argument_path_relative_to_a_tool">
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16 <repeat name="option_argument_path_relative_to_a_tool_repeat" title="INPUT DATA PATH: relative to a tool output directory" min="0" default="0">
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17 <param name="a_tool_output_dir" type="data" optional="false" multiple="false" label="a tool output directory"/>
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18 <param type="text" name="value" optional="true" label="relative path"/>
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19 </repeat>
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20 </xml>
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22 <!--shell command fragment-->
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23
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24 <!--<xml name="output_set">-->
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25 <!--<data format="html" name="report" label="${tool.name} report"/>-->
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26 <!--<data format="txt" name="tool_log" label="${tool.name} log"/>-->
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27 <!--<collection type="list" name="list_collection">-->
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28 <!--<discover_datasets pattern="__name_and_ext__" directory="list" />-->
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29 <!--</collection>-->
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30 <!--<collection type="paired" name="list_collection">-->
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31 <!--<discover_datasets pattern="__name_and_ext__" directory="paired_dir" />-->
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32 <!--</collection>-->
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33 <!--<collection type="list:paired" name="list_collection">-->
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34 <!--<discover_datasets pattern="(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.(?P&lt;ext&gt;[^\._]+)?"-->
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35 <!--directory="list_paired"/>-->
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36 <!--</collection>-->
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37 <!--</xml>-->
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38
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39 <!--tool citations-->
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40 <xml name="citations">
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41 <citation type="bibtex"><![CDATA[
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42 @article{allaire2016rmarkdown,
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43 title={rmarkdown: Dynamic Documents for R, 2016},
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44 author={Allaire, J and Cheng, Joe and Xie, Yihui and McPherson, Jonathan and Chang, Winston and Allen, Jeff
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45 and Wickham, Hadley and Atkins, Aron and Hyndman, Rob},
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46 journal={R package version 0.9},
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47 volume={6},
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48 year={2016}
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49 }
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50 ]]></citation>
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51 <citation type="bibtex"><![CDATA[
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52 @book{xie2015elastic,
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53 title={Dynamic Documents with R and knitr},
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54 author={Xie, Yihui},
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55 volume={29},
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56 year={2015},
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57 publisher={CRC Press}
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58 }
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59 ]]></citation>
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60 </xml>
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61 </macros>