diff elastic_tool.xml @ 0:b503fbd571a6 draft default tip

planemo upload

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/elastic_tool.xml	Tue Mar 27 10:05:29 2018 -0400
@@ -0,0 +1,38 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<tool id="elastic_bowtie2" name="elastic bowtie2" version="1.0.0">
+    <macros>
+        <import>elastic_tool_wrappers_macros.xml</import>
+    </macros>
+    <description/>
+    <requirements>
+        <expand macro="rmarkdown_requirements"/>
+    </requirements>
+    <expand macro="stdio"/>
+    <expand macro="shell_command"/>
+    <inputs>
+        <expand macro="tool_name"/>
+        <expand macro="option_argument_single_dataset"/>
+        <expand macro="option_argument_multiple_datasets"/>
+        <expand macro="option_argument_path_relative_to_a_tool"/>
+        <expand macro="option_argument_path_relative_to_this_tool"/>
+        <expand macro="option_argument_string_float_integer"/>
+    </inputs>
+    <outputs>
+        <expand macro="output_set"/>
+        <citation type="bibtex"><![CDATA[
+            @article{langmead2012fast,
+                title={Fast gapped-read alignment with Bowtie 2},
+                author={Langmead, Ben and Salzberg, Steven L},
+                journal={Nature methods},
+                volume={9},
+                number={4},
+                pages={357},
+                year={2012},
+                publisher={Nature Publishing Group}
+            }
+        ]]></citation>
+    </outputs>
+    <citations>
+        <expand macro="citations"/>
+    </citations>
+</tool>