# HG changeset patch
# User mingchen0919
# Date 1525187725 14400
# Node ID 9681e90f3e286286530810a21367a3c429840059
# Parent  7b3f6337c845a321646e07fdb3d2eb9adc9499f7
planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b-dirty

diff -r 7b3f6337c845 -r 9681e90f3e28 01_index_genome.Rmd
--- a/01_index_genome.Rmd	Tue May 01 11:06:46 2018 -0400
+++ b/01_index_genome.Rmd	Tue May 01 11:15:25 2018 -0400
@@ -9,14 +9,11 @@
 knitr::opts_chunk$set(error = TRUE, echo = FALSE)
 ```
 
-## Job scripts
 
 ```{bash, echo=FALSE}
 sh ${TOOL_INSTALL_DIR}/build-and-run-job-scripts.sh
 ```
 
-### Index genome
-
 ```{r echo=FALSE,results='asis'}
 # display content of the job-script.sh file.
 cat('```bash\n')
diff -r 7b3f6337c845 -r 9681e90f3e28 02_mapping.Rmd
--- a/02_mapping.Rmd	Tue May 01 11:06:46 2018 -0400
+++ b/02_mapping.Rmd	Tue May 01 11:15:25 2018 -0400
@@ -9,7 +9,6 @@
 knitr::opts_chunk$set(error = TRUE, echo = FALSE)
 ```
 
-### Mapping
 
 ```{r echo=FALSE,results='asis'}
 # display content of the job-script.sh file.
diff -r 7b3f6337c845 -r 9681e90f3e28 03_sam_to_sorted_bam.Rmd
--- a/03_sam_to_sorted_bam.Rmd	Tue May 01 11:06:46 2018 -0400
+++ b/03_sam_to_sorted_bam.Rmd	Tue May 01 11:15:25 2018 -0400
@@ -9,7 +9,6 @@
 knitr::opts_chunk$set(error = TRUE, echo = FALSE)
 ```
 
-### SAM to sorted BAM
 
 ```{r echo=FALSE,warning=FALSE,results='asis'}
 # display content of the job-script.sh file.
diff -r 7b3f6337c845 -r 9681e90f3e28 04_mapping_evaluation.Rmd
--- a/04_mapping_evaluation.Rmd	Tue May 01 11:06:46 2018 -0400
+++ b/04_mapping_evaluation.Rmd	Tue May 01 11:15:25 2018 -0400
@@ -9,7 +9,6 @@
 knitr::opts_chunk$set(error = TRUE, echo = FALSE)
 ```
 
-### Mapping evaluation
 
 ```{r echo=FALSE,warning=FALSE,results='asis'}
 # display content of the job-script.sh file.