view expose-outputs-to-galaxy-history.sh @ 3:42f9bad52d54 draft

planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b

# change directory to tool outputs directory
cd ${REPORT_FILES_PATH}

# copy outputs from tool outputs directory to corresponding galaxy output path
if [ -e "rmarkdown_report.html" ]; then
  cp rmarkdown_report.html ${REPORT}
fi

if [ -e "index.html" ]; then
  cp index.html ${REPORT}
fi

cp Aligned.out.sorted.bam ${X_S}