Mercurial > repos > mingchen0919 > aurora_star_site
comparison 04_mapping_evaluation.Rmd @ 5:9681e90f3e28 draft
planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b-dirty
| author | mingchen0919 |
|---|---|
| date | Tue, 01 May 2018 11:15:25 -0400 |
| parents | 42f9bad52d54 |
| children |
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| 4:7b3f6337c845 | 5:9681e90f3e28 |
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| 7 | 7 |
| 8 ```{r setup, include=FALSE, warning=FALSE, message=FALSE} | 8 ```{r setup, include=FALSE, warning=FALSE, message=FALSE} |
| 9 knitr::opts_chunk$set(error = TRUE, echo = FALSE) | 9 knitr::opts_chunk$set(error = TRUE, echo = FALSE) |
| 10 ``` | 10 ``` |
| 11 | 11 |
| 12 ### Mapping evaluation | |
| 13 | 12 |
| 14 ```{r echo=FALSE,warning=FALSE,results='asis'} | 13 ```{r echo=FALSE,warning=FALSE,results='asis'} |
| 15 # display content of the job-script.sh file. | 14 # display content of the job-script.sh file. |
| 16 cat('```bash\n') | 15 cat('```bash\n') |
| 17 cat(readLines(paste0(Sys.getenv('REPORT_FILES_PATH'), '/flagstat.sh')), sep = '\n') | 16 cat(readLines(paste0(Sys.getenv('REPORT_FILES_PATH'), '/flagstat.sh')), sep = '\n') |