diff command-line-arguments.csv @ 10:1b637e0a30b6 draft

planemo upload commit 61448862dc9016969191967aeefb7f7acce1e1f9-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/command-line-arguments.csv	Tue May 01 00:24:08 2018 -0400
@@ -0,0 +1,27 @@
+short flag,argument mask,data type,variable name
+o,1,character,report
+d,1,character,report.files_path
+A,1,character,first_reads
+B,1,character,second_reads
+x,1,character,adapter_first_reads
+y,1,character,adapter_second_reads
+m,1,character,trimming_mode
+r,1,character,maximum_allowed_error_rate
+D,1,character,maximum_allowed_indel_error_rate
+q,1,character,quality_trimming_3_end
+Q,1,character,mean_quality
+l,1,character,minimum_read_length
+j,1,character,advanced_options.junction_adapter
+M,1,character,advanced_options.tab_adapter
+b,1,character,advanced_options.barcode
+c,1,character,advanced_options.cut
+n,1,character,advanced_options.filter_degenerative_reads
+u,1,character,advanced_options.filter_undetermined_mate_pair_reads
+f,1,character,advanced_options.format
+z,1,character,advanced_options.compress
+E,1,character,advanced_options.qiime
+F,1,character,advanced_options.quiet
+i,1,character,advanced_options.intelligent
+1,1,character,trimmed_r1
+2,1,character,trimmed_r2
+3,1,character,trimmed_s