comparison expose-outputs.sh @ 9:c0e57c994deb draft

planemo upload commit 5b03cf1a31307c262701d4f267972bd01be24311

8:7c9170b7d9f6

# change directory to tool outputs directory
cd ${REPORT_FILES_PATH}

# copy outputs from tool outputs directory to corresponding galaxy output path
cp star.html ${REPORT}
cp Aligned.out.sorted.bam ${X_S}

9:c0e57c994deb

# change directory to tool outputs directory
cd ${REPORT_FILES_PATH}

# copy outputs from tool outputs directory to corresponding galaxy output path
cp skewer.html ${REPORT}

if [ -e trim-trimmed-pair1.fastq ]; then
  cp trim-trimmed-pair1.fastq ${X_1}
fi

if [ -e trim-trimmed-pair2.fastq ]; then
  cp trim-trimmed-pair2.fastq ${X_2}
fi

if [ -e trim-trimmed.fastq ]; then
  cp trim-trimmed.fastq ${X_3}
fi