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2
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1 short flag,argument mask,data type,variable name,galaxy input type,description
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2 o,1,character,report,data,
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3 d,1,character,report.files_path,,
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4 s,1,character,sink_message,data,
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5 A,1,character,first_reads,data,
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6 B,1,character,second_reads,data,
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7 x,1,character,adapter_first_reads,data,
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8 y,1,character,adapter_second_reads,data,
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9 m,1,character,trimming_mode,select,
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10 r,1,character,maximum_allowed_error_rate,float,
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11 D,1,character,maximum_allowed_indel_error_rate,float,
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12 q,1,character,quality_trimming_3_end,integer,
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13 Q,1,character,mean_quality,integer,
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14 l,1,character,minimum_read_length,integer,
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15 j,1,character,advanced_options.junction_adapter,data,
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16 M,1,character,advanced_options.tab_adapter,data,
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17 b,1,character,advanced_options.barcode,boolean,
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18 c,1,character,advanced_options.cut,text,
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19 n,1,character,advanced_options.filter_degenerative_reads,boolean,
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20 u,1,character,advanced_options.filter_undetermined_mate_pair_reads,boolean,
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21 f,1,character,advanced_options.format,select,
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22 z,1,character,advanced_options.compress,boolean,
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23 E,1,character,advanced_options.qiime,boolean,
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24 F,1,character,advanced_options.quiet,boolean,
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25 i,1,character,advanced_options.intelligent,boolean,
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26 1,1,character,trimmed_r1,
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27 2,1,character,trimmed_r2,
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28 3,1,character,trimmed_s, |
