Mercurial > repos > mingchen0919 > aurora_htseq

diff rmarkdown_report.Rmd @ 14:851112a0071d draft

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planemo upload commit 8758ce271d51387da37298280356fb3f34c4db49-dirty
author mingchen0919
date Mon, 14 May 2018 10:41:39 -0400
parents ce76fb2791e5
children 69157062629f
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--- a/rmarkdown_report.Rmd	Tue May 01 11:27:37 2018 -0400
+++ b/rmarkdown_report.Rmd	Mon May 14 10:41:39 2018 -0400
@@ -56,7 +56,7 @@
 ## Job script
 
 ```{bash, echo=FALSE}
-sh ${TOOL_INSTALL_DIR}/build-and-run-job-scripts.sh
+sh ${TOOL_INSTALL_DIR}/build-and-run-job-scripts.sh > ${REPORT_FILES_PATH}/log.txt 2>&1
 ```
 
 ```{r echo=FALSE, comment='', results='asis'}