Mercurial > repos > mingchen0919 > aurora_htseq

comparison htseq_count.sh @ 2:db9da9716914 draft

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add r-dt
author mingchen0919
date Wed, 07 Mar 2018 00:12:55 -0500
parents cc33706a1d4b
children 0fdb0d5f53ce
comparison
equal deleted inserted replaced
1:cc33706a1d4b 2:db9da9716914
1 Rscript '${__tool_directory__}/aurora_htseq_count.R' 1 Rscript '${__tool_directory__}/htseq_count_render.R'
2 2
3 -e $echo 3 -e $echo
4 -o $report 4 -o $report
5 -d $report.files_path 5 -d $report.files_path
6 -s $sink_message 6 -s $sink_message
7 -t '${__tool_directory__}' 7 -t '${__tool_directory__}'
8 8
9 -A '$alignment_files'
10 -B '$sample_names'
11 -G $gff
9 -f $format 12 -f $format
10 -r $order 13 -r $order
11 -S $stranded 14 -S $stranded
12 -a $minaqual 15 -a $minaqual
13 -T $feature_type 16 -T $feature_type
14 -i $idattr 17 -i $idattr
15 -I $additional_attr
16 -m $mode 18 -m $mode
19 -c $count