Mercurial > repos > mingchen0919 > aurora_htseq

comparison htseq_count_render.R @ 6:7c54fd452b8e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
add kableExtra package
author mingchen0919
date Wed, 18 Apr 2018 15:59:38 -0400
parents aacd5f53ac99
children 1696f5ee0fe7
comparison
equal deleted inserted replaced
5:aacd5f53ac99 6:7c54fd452b8e
9 options(stringsAsFactors = FALSE) 9 options(stringsAsFactors = FALSE)
10 # import libraries 10 # import libraries
11 library(getopt) 11 library(getopt)
12 library(rmarkdown) 12 library(rmarkdown)
13 library(htmltools) 13 library(htmltools)
14 library(kableExtra)
15 library(magrittr)
14 # load helper functions 16 # load helper functions
15 source(paste0(Sys.getenv('TOOL_INSTALL_DIR'), '/helper.R')) 17 source(paste0(Sys.getenv('TOOL_INSTALL_DIR'), '/helper.R'))
16 # import getopt specification matrix from a csv file 18 # import getopt specification matrix from a csv file
17 opt = getopt(getopt_specification_matrix('getopt_specification.csv', 19 opt = getopt(getopt_specification_matrix('getopt_specification.csv',
18 tool_dir=Sys.getenv('TOOL_INSTALL_DIR'))) 20 tool_dir=Sys.getenv('TOOL_INSTALL_DIR')))