Mercurial > repos > mingchen0919 > aurora_htseq
annotate expose-outputs-to-galaxy-history.sh @ 13:650f71d8fc4e draft
planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b-dirty
| author | mingchen0919 |
|---|---|
| date | Tue, 01 May 2018 11:27:37 -0400 |
| parents | ce76fb2791e5 |
| children | 851112a0071d |
| rev | line source |
|---|---|
|
11
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
1 # change directory to tool outputs directory |
|
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
2 cd ${REPORT_FILES_PATH} |
|
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
3 |
|
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
4 # copy outputs from tool outputs directory to corresponding galaxy output path |
|
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
5 if [ -e "rmarkdown_report.html" ]; then |
|
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
6 cp rmarkdown_report.html ${REPORT} |
|
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
7 fi |
|
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
8 |
|
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
9 if [ -e "index.html" ]; then |
|
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
10 cp index.html ${REPORT} |
|
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
11 fi |
|
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
12 |
|
ce76fb2791e5
planemo upload commit d28f1764ef50ca42f996cada585cfcea9ec04e5a
mingchen0919
parents:
diff
changeset
|
13 cp count_data.csv ${X_c} |
