Mercurial > repos > mingchen0919 > aurora_findssrs

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planemo upload commit 0ab80de699747ead439fcaccfdd73f66066affc1-dirty
author mingchen0919
date Fri, 09 Nov 2018 15:12:12 -0500
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# run SHELL_SCRIPT within tool outputs directory
cd ${REPORT_FILES_PATH}

cp $X_f input

# generate findSSRs.sh script
cat >findSSRs.sh <<EOF

perl ${TOOL_INSTALL_DIR}/findSSRs_altered.pl \\
  -f input \\
  -m $X_m > log.txt 2>&1

EOF

# run dustmasker job
sh findSSRs.sh