annotate index.Rmd @ 0:f74fdae99053 draft

planemo upload
author mingchen0919
date Tue, 27 Feb 2018 00:39:56 -0500
parents
children 94762f1cb779
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
1 ---
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
2 title: "FastQC Report"
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
3 output: html_document
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
4 ---
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
5
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
6 ```{r setup, include=FALSE, warning=FALSE, message=FALSE}
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
7 knitr::opts_chunk$set(echo = TRUE, error = TRUE)
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
8 ```
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
9
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
10
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
11
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
12 ## References
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
13
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
14 * Bioinformatics, Babraham (2014). FastQC.
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
15
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
16 * Allaire, J and Cheng, Joe and Xie, Yihui and McPherson, Jonathan and Chang, Winston and Allen, Jeff and Wickham, Hadley and Atkins, Aron and Hyndman, Rob (2016). rmarkdown: Dynamic Documents for R, 2016. In R package version 0.9, 6.
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
17
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
18 * Xie, Yihui (2015). Dynamic Documents with R and knitr, CRC Press, Vol.29.
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
19
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
20 * Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy (2017). plotly: Create Interactive Web Graphics via 'plotly.js'. R package version 4.6.0. [Link]
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
21
f74fdae99053 planemo upload
mingchen0919
parents:
diff changeset
22 * Wickham, H. (2016). ggplot2: elegant graphics for data analysis. Springer. Chicago