Mercurial > repos > mingchen0919 > aurora_fastq_dump

diff fastq_dump.sh @ 0:81c6ecc7b245 draft

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planemo upload
author mingchen0919
date Wed, 04 Apr 2018 11:06:18 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fastq_dump.sh	Wed Apr 04 11:06:18 2018 -0400
@@ -0,0 +1,9 @@
+export TOOL_DIR='${__tool_directory__}' &&
+
+Rscript '${__tool_directory__}/'fastq_dump_render.R
+
+	-o '$report'
+	-d '$report.files_path'
+	-s '$sink_message'
+	-A '$accessions_single_end'
+	-B '$accessions_paired_end'