# HG changeset patch
# User mingchen0919
# Date 1526312410 14400
# Node ID 20061de8f3f2941a8f49cebbe82e20b7045438b7
# Parent  b69138a05735dd94ca266fb30b9e94ebaa375b7f
planemo upload commit 7d411a114317ebd9dfc6a20a7f132e653ccad986-dirty

diff -r b69138a05735 -r 20061de8f3f2 01_deseq2_analysis.Rmd
--- a/01_deseq2_analysis.Rmd	Tue May 01 11:44:04 2018 -0400
+++ b/01_deseq2_analysis.Rmd	Mon May 14 11:40:10 2018 -0400
@@ -14,7 +14,7 @@
 # import count data
 count_data = read.csv(opt$X_A, row.names = 1, header = TRUE)
 # import column data
-coldata = read.csv(opt$X_B, row.names = 1, header = TRUE)[colnames(count_data), ]
+coldata = read.csv(opt$X_B, row.names = 1, header = TRUE)[colnames(count_data),,drop=FALSE]
 ```
 
 ```{r echo=FALSE}
diff -r b69138a05735 -r 20061de8f3f2 expose-outputs-to-galaxy-history.sh
--- a/expose-outputs-to-galaxy-history.sh	Tue May 01 11:44:04 2018 -0400
+++ b/expose-outputs-to-galaxy-history.sh	Mon May 14 11:40:10 2018 -0400
@@ -10,4 +10,6 @@
   cp index.html ${REPORT}
 fi
 
-cp padj-sorted-significant-genes.txt ${X_J}
\ No newline at end of file
+if [ -e "padj-sorted-significant-genes.txt" ]; then
+  cp padj-sorted-significant-genes.txt ${X_J}
+fi
\ No newline at end of file